VDS_PCA_Cluster_Filtering/README.md

Cluster

[🚧WIP🚧] Cluster visualisation and filtering tool, uses Jupyter notebook.
Requires the dataviz38 conda environment : conda activate dataviz38

TODO

All computation timings are done with the HTS_libraries_all_v6_PCA_no_structure.csv file

• ✅ Plot 3D cluster (~1:00)
• ✅ Speed upgrade using dask (~4:21)
• ❌ Interactive graph
• ✅ Box, sphere and ellipsoid-based filtering (~1:00, ~1:22, ~1:40)
• ❌ Neighborhood filtering
• ❌ CLI usage