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Hugo Beaubrun 2024-06-25 15:48:21 +02:00
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# Cluster
[🚧WIP🚧] Cluster visualisation and filtering tool, uses Jupyter notebook.
Requires the `dataviz38` conda environment.
Requires the `dataviz38` conda environment : `conda activate dataviz38`
# TODO
All computation timings are done with the HTS_libraries_all_v6_PCA_no_structure.csv file
- ✅ Plot 3D cluster (~1min)
- ❌ Speed upgrade using dask (~4:21)
- ✅ Plot 3D cluster (~1:00)
- ✅ Speed upgrade using dask (~4:21)
- ❌ Interactive graph
- ✅ Box, sphere and ellipsoid-based filtering
- Neighborhood filtering
- CLI usage
- ✅ Box, sphere and ellipsoid-based filtering (~1:00, ~1:22, ~1:40)
- ❌ Neighborhood filtering
- ❌ CLI usage